organism¶
This section is auto-generated from the help text for the chakin command
organism
.
add_organism
command¶
Usage:
chakin organism add_organism [OPTIONS] GENUS SPECIES COMMON ABBR
Help
Add a new organism to the Chado database
Output
Organism information
Options:
--comment TEXT A comment / description
-h, --help Show this message and exit.
delete_all_organisms
command¶
Usage:
chakin organism delete_all_organisms [OPTIONS]
Help
Delete all organisms
Output
None
Options:
--confirm Confirm that you really do want to delete ALL of the organisms.
-h, --help Show this message and exit.
delete_organisms
command¶
Usage:
chakin organism delete_organisms [OPTIONS]
Help
Delete all organisms
Output
None
Options:
--organism_id INTEGER organism_id filter
--genus TEXT genus filter
--species TEXT species filter
--common TEXT common filter
--abbr TEXT abbr filter
--comment TEXT comment filter
-h, --help Show this message and exit.
get_organisms
command¶
Usage:
chakin organism get_organisms [OPTIONS]
Help
Get all or some organisms
Output
Organisms information
Options:
--organism_id INTEGER organism_id filter
--genus TEXT genus filter
--species TEXT species filter
--common TEXT common filter
--abbr TEXT abbr filter
--comment TEXT comment filter
-h, --help Show this message and exit.