chado.export package

Module contents

Export data from chado

class chado.export.ExportClient(engine, metadata, session, ci)

Bases: chado.client.Client

Export data from the chado database

export_fasta(organism_id, file=False)

Export reference sequences as fasta.

Parameters:
  • organism_id (int) – Organism ID
  • file (bool) – If true, write to files in CWD
Return type:

None
Returns:

None
export_gbk(organism_id)

Export organism features as genbank

Parameters:organism_id (int) – Organism ID
Return type:None
Returns:None
export_gff3(organism_id)

Export organism features as GFF3

Parameters:organism_id (int) – Organism ID
Return type:None
Returns:None