Commands

Chakin is a set of wrappers for accessing Chado. Each utility is implemented as a subcommand of chakin. This section of the documentation describes these commands.

• analysis
  • add_analysis command
  • delete_analyses command
  • get_analyses command
• export
  • export_fasta command
  • export_gbk command
  • export_gff3 command
• expression
  • add_biomaterial command
  • add_expression command
  • delete_all_biomaterials command
  • delete_biomaterial command
  • delete_biomaterials command
  • get_biomaterials command
• feature
  • delete_features command
  • get_feature_analyses command
  • get_feature_cvterms command
  • get_features command
  • load_fasta command
  • load_featureprops command
  • load_gff command
  • load_go command
• load
  • blast command
  • go command
  • interpro command
• organism
  • add_organism command
  • delete_all_organisms command
  • delete_organisms command
  • get_organisms command
• phylogeny
  • add_cvterms command
  • gene_families command
  • gene_order command
  • load_tree command
• util
  • dbshell command
  • launch_docker_image command